Ecosystem

Key upstream packages

drugforge relies extensively on several key packages within the molecular simulation community.

drugforge-alchemy relies heavily on Open Free Energy and alchemiscale to perform alchemical free energy calculations
drugforge-ml relies on MTENN to modularize training and evaluation of structure based ML
drugforge-simulation relies on OpenMM and OpenForceField for running and parameterizing MD simulations respectively.
drugforge-spectrum uses Colabfold for protein structure prediction.

Thanks also to the whole FOSS community and the tireless work done to make all of this possible.

Downstream packages

ASAP maintains several satellite packages that depend on the functionality in the drugforge repo.

Each of these help us fulfil our purpose as an open-science drug discovery enterprises.

Argos

Argos is an online Django based viewer for 3D renders of fitness data on protein-ligand complexes that you can find here . Currently restricted to ASAP collaborators, we are aiming to make this open to the public as a webserver in the future.

Hindsight-public

Hindsight-public is an automatically updated repository that tracks the computational predictions made by ASAP that have experimental equivalents and tracks their accuracy versus those experimental outcomes. This is automatically updated from our systems of record and allows us to keep track of our performance in real time.

FALCBot

FALCBot is a slackbot to run free energy calculations and ML predictions using the slack API, enabling easy access to predictions for non-experts.

Spinouts

We are aiming to productize some aspects of the asapdiscovery stack into their own standalone products. See future for more information.

Choppa

Choppa is a spinout of our fitness PyMOL and HTML viewer for arbitrary fitness data in the form of, for example, DMS or phylospectrum experiments.

Quaid-Alchemy

Quaid-Alchemy is a planned spinout of our free energy calculation tooling into a standalone product. Watch this space!