drugforge.data.services.rcsb.rcsb_download

Functions

align_all_pdbs(pdb_list, pdb_dir_path[, ...])

Given a list of PDB_IDs and the directory to them, align all to a ref or to the first in the list.

download_PDBs(pdb_list, pdb_dir[, ...])

Downloads pdbs from pdb_list_yaml using Kinoml.

download_pdb_structure(pdb_id, directory[, ...])

Download a structure, using the specified format/type.

pymol_alignment(pdb_path, ref_path, out_path)

Uses Pymol to align a pdb to reference and save the aligned file.